Zimmer SL, Fei Z, Stern DB. 2008. Genome-based analysis of Chlamydomonas reinhardtii proteins involved in RNA 5’ and 3’ end metabolism predicts unexpected organellar and exosomal features. Genetics 179: 125-136

Yehudai-Resheff S, Zimmer SL, Komine Y, Stern DB. 2007. Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii. Plant Cell 19: 1023-1038

Wostrikoff K and, Stern DB. 2007. Rubisco large subunit translation is autoregulated in response to its assembly state in tobacco chloroplasts. Proc. Natl. Acad. Sci. USA 104: 6466-6471

Merchant SS, Prochnik SE et al. 2007. The evolution of key animal and plant functions is revealed by analysis of the Chlamydomonas genome. Science 318: 245-250

Cahoon AB, Takacs EM, Sharpe RM, Stern DB. 2007. Nuclear, chloroplast, and mitochondrial transcript abundance along a maize leaf developmental gradient. Plant Mol. Biol 66: 33-46

Rymarquis, L. A., D. C. Higgs, D. B. Stern. 2006. Nuclear Suppressors Define Three Factors that Participate in Both 5’ and 3’ End Processing of mRNAs in Chlamydomonas chloroplasts. The Plant Journal 46: 448-461

Cui, L., J. Leebens-Mack, L. S. Wang, J. Tang, L. Rymarquis, D. B. Stern, C. W. dePamphilis. 2006. Adaptive Evolution of Chloroplast Genome Structure Inferred Using a Parametric Bootstrap Approach. BMC Evolutionary Biology 6: 13

Bohne, A. V., V. Ihrimovitch, A. Weihe, D. B. Stern. 2006. Chlamydomonas reinhardtii Encodes a Single sigma70-like Factor Which Likely Functions in Chloroplast Transcription. Current Genetics 49: 333-340

Irihimovitch, V., D. B. Stern. 2006. The sulfur acclimation SAC3 kinase is required for chloroplast transcriptional repression under sulfur limitation in Chlamydomonas reinhardtii. Proc Natl Acad Sci USA 103: 7911-7916

Rymarquis, L. A., J. M. Handley, M. Thomas, D. B. Stern. 2005. Beyond Complementation: Map-Based Cloning in Chlamydomonas reinhardtii. Plant Physiology 137: 557-566

Murakami, S., K. Kuehnle, D. B. Stern. 2005. A Spontaneous tRNA Suppressor of a Mutation in the Chlamydomonas reinhardtii Nuclear MCD1 Gene Required for Stability of the Chloroplast petD mRNA. Nucleic Acids Research 33: 3372-3380

Erickson, B., D. B. Stern, D. C. Higgs. 2005. Microarray Analysis Confirms the Specificity of a Chlamydomonas reinhardtii Chloroplast RNA Stability Mutant. Plant Physiology 137: 534-544

Cohen, I., J. A. Knopf, V. Irihimovitch, M. Shapira. 2005. A Proposed Mechanism for the Inhibitory Effects of Oxidative Stress on Rubisco Assembly and Its Subunit Expression. Plant Physiology 137: 738-746

Bollenbach, T. J., H. Lange, R. Gutierrez, D. B. Stern, D. Gagliardi. 2005. RNR1, a 3’-5’ Exoribonuclease Belonging to the RNR Superfamily, Catalyzes 3’ Maturation of Chloroplast Ribosomal RNAs in Arabidopsis thaliana. Nucleic Acids Research 33: 2751-2763

Stern, D. B., M. R. Hanson, A. Barkan. 2004. Genetics and Genomics of Chloroplast Biogenesis: Maize as a Model System. Trends in Plant Science 9: 293-301

Nishimura, Y., E. A. Kikis, S. L. Zimmer, Y. Komine, D. B. Stern. 2004. Antisense Transcript and RNA Processing Alterations Suppress Instability of Polyadenylated mRNA in Chlamydomonas chloroplasts. Plant Cell 16: 2849-2869